MPS MtL Publikationen
Umfassende Liste der Veröffentlichungen von Studierenden und Fellows der MtL
Auf dieser Seite findet ihr Veröffentlichungen, an denen Studierende als Autoren beteiligt sind. Die Namen von Matter to Life Studierenden und Fellows sind hervorgehoben.
2025
- Hsu, C.-P.; Hordeichyk, A.; Aretz, J.; Fässler, R.; Bausch, A.R. Synergistic effect of PIP₂ and PIP₃ on membrane-induced phase separation of integrin complexes. Biophys. J. (2025) https://doi.org/10.1016/j.bpj.2025.04.011
- Ruider, I.; Pastucha, A.; Raich, M.K.; Xu, W.; Liu, Y.; Reichert, M.; Weitz, D.; Bausch, A.R. Accelerated maturation of branched organoids confined in collagen droplets. Lab Chip. Advance Article (2025) https://doi.org/10.1039/D5LC00287G
- Hahmann, J.; Schüpp, B. N.; Ishaqat, A.; Selvakumar, A.; Göstl, R.; Gräter, F.; Herrmann, A. Sequence-specific, mechanophore-free mechanochemistry of DNA. Chem 11 (4) 102376 (2025) https://doi.org/10.1016/j.chempr.2024.11.014
- Wilhelm, J.; Nickel, L.; Lin, Y.-H.; Hiblot, J.; Johnsson, K. Improving split-HaloTag through computational protein engineering. Protein Sci. 34 (5) e70123 (2025) https://doi.org/10.1002/pro.70123
- Kriebisch, C. M. E.; Bantysh, O.; Baranda Pellejero, L.; Belluati, A.; Bertosin, E.; Dai, K.; de Roy, M.; Fu, H.; Galvanetto, N.; Gibbs, J. M.; Gomez, S. S.; Granatelli, G.; Griffo, A.; Guix, M.; Gurdap, C. O.; Harth-Kitzerow, J.; Haugerud, I. S.; Häfner, G.; Jaiswal, P.; Javed, S.; Karimi, A.; Kato, S.; Kriebisch, B. A. K.; Laha, S.; Lee, P.-W.; Lipinski, W. P.; Matreux, T.; Michaels, T. C. T.; Poppleton, E.; Ruf, A.; Slootbeek, A. D.; Smokers, I. B. A.; Soria-Carrera, H.; Sorrenti, A.; Stasi, M.; Stevenson, A.; Thatte, A.; Tran, M.; van Haren, M. H. I.; Vuijk, H. D.; Wickham, S. F. J.; Zambrano, P.; Adamala, K. P.; Alim, K.; Andersen, E. S.; Bonfio, C.; Braun, D.; Frey, E.; Gerland, U.; Huck, W. T. S.; Jülicher, F.; Laohakunakorn, N.; Mahadavan, L.; Otto, S.; Saenz, J.; Schwille, P.; Göpfrich, K.; Weber, C. A.; Boekhoven, J. A roadmap toward the synthesis of life. Chem 2025, 11 (3), 102399. https://doi.org/10.1016/j.chempr.2024.102399.
- Wang, Y.; Aubermann, F.; Spatz, J. P. Enhanced ion mobility in Helmholtz layer enabling ultrathick electrodes. ACS Nano, 2025, 19 (18), 17917–17928. https://doi.org/10.1021/acsnano.5c04343.
- Merino-Salomón, A.; Schneider, J.; Babl, L.; Schwille, P. Crosslinking by ZapD drives the assembly of short FtsZ filaments into toroidal structures in solution. eLife 2025, 14, e95557. https://doi.org/10.7554/eLife.95557.
- Berendes, O.; Grubmüller, H. Structural dynamics of ribosome-stalling peptides in the ribosomal exit tunnel uncovered by MD simulations. Biophysical Journal 2025, 124 (3), 123a. https://doi.org/10.1016/j.bpj.2024.11.512.
- Chen, Y.; Dietz, H. Nanocarrier imaging at single-cell resolution across entire mouse bodies. Nat Biotechnol 2025, 43 (9), 1539–1547. https://doi.org/10.1038/s41587-024-02528-1.
- Kompa, J.; Maager, M.; Cavalcanti-Adam, E. A.; Johnsson, K. SiR-XActin: A fluorescent probe for imaging actin dynamics. bioRxiv 2025, 2025.02.04.636537. https://doi.org/10.1101/2025.02.04.636537.
- Greicius, P.; Gräter, F. ColBuilder: flexible structure generation of crosslinked collagen fibrils. Bioinformatics 2025, 41 (6), btaf278. https://doi.org/10.1093/bioinformatics/btaf278.
- Häfner, G.; Boekhoven, J. Chemically Fueled Active Transport. Angewandte Chemie International Edition 2025, 64 (1), e20241347. https://doi.org/10.1002/anie.202500243.
- Nayak, S. P.; Grubmüller, H. Interfacial water confers transcription factors with dinucleotide specificity. Nature Structural & Molecular Biology 2025, 32, 650–661. https://doi.org/10.1038/s41594-024-01449-6.
- Reichardt, M.; Salditt, T. Three-dimensional structure of entire hydrated murine hearts at histological resolution. Scientific Reports 2025, 15, 2766. https://doi.org/10.1038/s41598-024-83853-y.
- Sastre, J.; Thatte, A.; Bergmann, A. M.; Stasi, M.; Tena-Solsona, M.; Weber, C. A.; Boekhoven, J. Size control and oscillations of active droplets in synthetic cells. Nature Communications 2025, 16, 2003. https://doi.org/10.1038/s41467-025-57240-8.
- Taskina, A.; Klumpp, S. Enhanced condensate fluidity in modified patchy particle models. J Chem Phys 2025, 162, 214901. https://doi.org/10.1063/5.0268239.
- Wilhelm, J.; Johnsson, K. Improving split-HaloTag through computational protein engineering. Protein Science 2025, 34 (3), e4890. https://doi.org/10.1002/pro.70123.
- Wilhelm, J.; Johnsson, K. SNAP-tag2 for faster and brighter protein labeling. Nature Chemical Biology 2025, 21 (7), 890–897. https://doi.org/10.1038/s41589-025-01942-z.
- Lewis, N. S.; Zedlitz, S.; Ausserwöger, H.; McCall, P. M.; Hubatsch, L.; Nousch, M.; Ruer-Gruß, M.; Hoege, C.; Jülicher, F.; Eckmann, C. R.; Knowles, T. P. J.; Hyman, A. A. A mechanism for MEX-5-driven disassembly of PGL-3/RNA condensates in vitro. Proc. Natl. Acad. Sci. U.S.A. 2025, 122 (20), e2412218122. https://doi.org/10.1073/pnas.2412218122.
- Zhang, C.; Köster, S. One-step nanoscale expansion microscopy reveals individual protein shapes. Nat Biotechnol 2025, 43 (9), 1539–1547. https://doi.org/10.1038/s41587-024-02431-9.
- Lewis, N.S.; Zedlitz, S; Ausserwöger; H.; McCall, P.M.; Hubatsch, L.; Nousch, M.; Ruer-Gruß, M; Hoege, C.; Jülicher; F.; Eckmann; C.R.; Knowles, T.P.J. ; Hyman, A.A. A mechanism for MEX-5-driven disassembly of PGL-3/RNA condensates in vitro. Proc. Natl. Acad. Sci. U.S.A. 122 (20) e2412218122 (2025)https://doi.org/10.1073/pnas.2412218122.
- Aubermann, F.; Seneca, S.; Hofman, T.; Garcés-Lázaro, I.; Karim Ajmail, A.; Daubner, K.; Cerwenka, A.; Platzman, I.; Spatz, J.P. Modular Droplet-Based Microfluidic Platform for Functional Phenotypic Screening of Natural Killer Cells. Small Methods 2025, 2500236. https://doi.org/10.1002/smtd.202500236
- Häge, F.R; Schwan, M.; Conde González, M.R.; Huber, J.; Germer, S.; Macrì, M.; Kopp, J; Sinning, S.; Thomas, F. Strand-Swapped SH3 Domain Dimer with Superoxide Dismutase Activity. ACS Central Science 2025 11 (1), 157-166. DOI: 10.1021/acscentsci.4c01347
2024
- Abbaspour, L.; Golestanian, R. Collective self-caging of active filaments in virtual confinement. Nature Communications 2024, 15, 9122. https://doi.org/10.1038/s41467-024-52936-9.
- Abbaspour, L.; Klumpp, S. Quantifying gliding forces of filamentous cyanobacteria by self-buckling. eLife 2024, 12, RP87450. https://doi.org/10.7554/eLife.87450.
- Babu, S.; De Laporte, L. Actuation of Soft Thermoresponsive Hydrogels Mechanically Stimulates Osteogenesis. ACS Applied Materials & Interfaces 2024, 16 (1), 30–43. https://doi.org/10.1021/acsami.3c11808.
- Babl, L.; Schwille, P. Machine learning-aided design and screening of an emergent protein function. Nat Commun 2024, 15, 2010. https://doi.org/10.1038/s41467-024-46203-0.
- Babl, L.; Schwille, P. Measuring Partition Coefficients of In Vitro Biomolecular Condensates. Methods Mol Biol 2024, 2828, 107–117. https://doi.org/10.1007/978-1-0716-3930-6_21.
- Babl, L.; Schwille, P. Membrane-induced 2D phase separation of the focal adhesion protein talin. Nat Commun 2024, 15, 4986. https://doi.org/10.1038/s41467-024-49222-z.
- Baur, P.; Comba, P. A Dicopper(II)-Based Carbonic Anhydrase Model-Quantum-Chemical Evaluation of the Mechanistic Pathway. Angewandte Chemie International Edition 2024, 63 (2), e202317112. https://doi.org/10.1002/anie.202319530.
- Baur, P.; Comba, P. Copper coordination chemistry of the patellamides - cyanobactins in the ascidian-Prochloron symbiosis. Dalton Transactions 2024, 53 (14), 6078–6088. https://doi.org/10.1039/d4dt03002h.
- Berendes, O.; Grubmüller, H. Multimodal binding and inhibition of bacterial ribosomes by the antimicrobial peptides Api137 and Api88. Nature Communications 2024, 15, 3945. https://doi.org/10.1038/s41467-024-48027-4.
- Bohra, N.; Diehl, D.; Erb, T. J. In vitro transcription-based biosensing of glycolate for prototyping of a complex enzyme cascade. Synthetic Biology 2024, 9 (1), ysae013. https://doi.org/10.1093/synbio/ysae013.
- Bohra, N.; Diehl, C.; Yang, H. Y.; Erb, T. J. Integrated translation and metabolism in a partially self-synthesizing biochemical network. Science 2024, 385 (6705), 174–178. https://doi.org/10.1126/science.adn3856.
- Chen, Y.; Grubmüller, H. Towards a minimal Markov model for rotary catalysis of F1-ATPase. Biophysical Journal 2024, 123 (3), 324a. https://doi.org/10.1016/j.bpj.2023.11.1984.
- Diehl, D.; Bodenschatz, E. Electrotaxis of Dictyostelium discoideum, Migration in an Electric Field. Methods Mol Biol 2024, 2828, 107–117. https://doi.org/10.1007/978-1-0716-4023-4_10.
- Fazliev, S.; Göpfrich, K.; Cavalcanti-Adam, E. A. Membrane localization of actin filaments stabilizes giant unilamellar vesicles. European Journal of Cell Biology 2024, 103 (2), 151410. https://doi.org/10.1016/j.ejcb.2024.151428.
- Fazliev, S.; Kishore, A.; Comba, P.; Thomas, F. Relationship of Thermostability and Binding Affinity in Metal-binding WW-Domain Minireceptors. Chembiochem 2024, 25 (4), e202300715. https://doi.org/10.1002/cbic.202300715.
- Feigl, E.; Golestanian, R.; Dietz, H. A DNA turbine powered by a transmembrane potential across a nanopore. Nature Nanotechnology 2024, 19 (3), 338–344. https://doi.org/10.1038/s41565-023-01527-8.
- Geisler, J.; Hyman, A. A.; Grill, S. W. Actin polymerization counteracts prewetting of N-WASP on supported lipid bilayers. PNAS 2024, 121 (50), e2407497121. https://doi.org/10.1073/pnas.2407497121.
- Hahmann, J.; Ishaqat, A.; Herrmann, A. Sonogenetics for Monitoring and Modulating Biomolecular Function by Ultrasound. Angewandte Chemie International Edition 2024, 63 (27), e202317112. https://doi.org/10.1002/anie.202317112.
- Ishaqat, A.; Hahmann, J.; Herrmann, A. In Vivo Polymer Mechanochemistry with Polynucleotides. Advanced Materials 2024, 36 (32), 2403752. https://doi.org/10.1002/adma.202403752.
- Ivanova, J. R.; Schaefer, J. V.; Dreier, B.; Hermann, L. O.; Schöppe, J.; Schäfer, B.; Gebel, J.; Osterburg, C.; Chaikuad, S.; Knapp, S.; Plückthun, A.; Missirlis, D.; Spatz, J. P. Designed Ankyrin Repeat Proteins as Actin Labels of Distinct Cytoskeletal Structures in Living Cells. ACS Nano 2024, 18 (12), 8919–8933. https://doi.org/10.1021/acsnano.3c12265.
- Lardon, N.; Wang, L.; Tschanz, A.; Hoess, P.; Tran, M.; D'Este, E.; Ries, J.; Johnsson, K. Gentle Rhodamines for Live-Cell Fluorescence Microscopy. ACS Central Science 2024, 10 (10), 1933–1944. https://doi.org/10.1021/acscentsci.4c00616.
- Macher, M.; Obermeier, A.; Fabritz, S.; Kube, M.; Kempf, H.; Dietz, H.; Platzman, I.; Spatz, J. P. An Efficient Method for the Production of High-Purity Bioinspired Large Unilamellar Vesicles. ACS Synthetic Biology 2024, 13 (3), 781–791. https://doi.org/10.1021/acssynbio.3c00540.
- Major, A.; Taskina, A.; Zwicker, D.; Salditt, T. Vesicle condensation induced by synapsin: condensate size, geometry, and vesicle shape deformations. European Physical Journal E 2024, 47, 8. https://doi.org/10.1140/epje/s10189-023-00404-5.
- Rennekamp, B.; Grubmüller, H.; Gräter, F. Hidden length lets collagen buffer mechanical and chemical stress. Physical Review E 2024, 109 (2), 024404. https://doi.org/10.1103/PhysRevE.110.054408.
- Schramm, A.; Jeschenko, P.; Spatz, J. P. Modular Porous Polymer-Based Microcapsules for Trapping and Near-Infrared Light-Triggered Killing of Bacteria. ACS Applied Nano Materials 2024, 7 (19), 22650–22661. https://doi.org/10.1021/acsanm.4c03636.
- Stasi, M.; Boekhoven, J. Active droplets through enzyme-free, dynamic phosphorylation. Nature Communications 2024, 15, 4204. https://doi.org/10.1038/s41467-024-48571-z.
- Stasi, M.; Boekhoven, J. Fuel-Driven Dynamic Combinatorial Peptide Libraries. Angewandte Chemie International Edition 2024, 63 (42), e202407424. https://doi.org/10.1002/anie.202407424.
- Stasi, M.; Braun, D.; Gerland, U.; Boekhoven, J. Template-based copying in chemically fuelled dynamic combinatorial libraries. Nature Chemistry 2024, 16 (8), 1240–1249. https://doi.org/10.1038/s41557-024-01570-5.
- Wilhelm, J.; Johnsson, K. Recording physiological history of cells with chemical labeling. Science 2024, 383 (6685), 890–897. https://doi.org/10.1126/science.adg0812.
- Aubermann, F.; Frey, C.; Jahnke, T.; Wang, Y.; Weber, S.; Platzman, I.; Spatz, J. P. Evaluation of Acoustophoretic and Dielectrophoretic Forces for Droplet Injection. ACS Omega 2024, 9 (14), 16097–16105. https://doi.org/10.1021/acsomega.3c09881.
- Lauer, S.M.; Reepmeyer, M.; Berendes, O.; Klepacki, D.; Gasse, J.; Gabrielli, S.; Grubmüller, H.; V. Bock, L.; Krizsan, A.; Nikolay, R.; Spahn, C.M.T. & Hoffmann, R. Multimodal binding and inhibition of bacterial ribosomes by the antimicrobial peptides Api137 and Api88. Nat Commun 15, 3945, 2024. https://doi.org/10.1038/s41467-024-48027-4
- Pham, T.L.; Conde González, M. R.; Fazliev, S.; Kishore, A.; Comba, P.; Thomas, F. Relationship of Thermostability and Binding Affinity in Metal-binding WW-Domain Minireceptors. ChemBioChem, Volume25, Issue4, 2024. https://doi.org/10.1002/cbic.202300715
- Wiegand, T.; Liu, J.; Vogeley, L; LuValle-Burke, I.; Geisler, J.; Fritsch, A.W.; Hyman A.A.; and Grill, S.W. Actin polymerization counteracts prewetting of N-WASP on supported lipid bilayers, Proc. Natl. Acad. Sci. U.S.A. 121 (50) e2407497121, 2024. https://doi.org/10.1073/pnas.2407497121
- Wössner, V.; Drozdowski, O. M.; Ziebert, F.; Schwarz, U. S. Active gel model for one-dimensional cell migration coupling actin flow and adhesion dynamics, New. J. Phys. 26, 073039, 2024. https://iopscience.iop.org/article/10.1088/1367-2630/ad63c5
- Afting, C.; Walther, T.; Drozdowski, O. M., Schlagheck, C.; Schwarz, U. S.; Wittbrodt; J., Göpfrich, K. DNA microbeads for spatio-temporally controlled morphogen release within organoids. Nat. Nanotechnol. 19, 1849–1857, 2024. https://www.nature.com/articles/s41565-024-01779-y
- Drozdowski, O. M.; Schwarz, U. S. Cell bulging and extrusion in a three-dimensional bubbly vertex model for curved epithelial sheets, arXiv:2411.07141, 2024. https://doi.org/10.48550/arXiv.2411.07141
- Santini, B.L.; Wendel, S.; Halbwedl, N.; Knipp, A.; Zacharias, M. cPEPmatch Webserver: A comprehensive tool and database to aid rational design of cyclic peptides for drug discovery. 2024. Computational and Structural Biotechnology Journal. Volume 23. https://doi.org/10.1016/j.csbj.2024.08.008
- Santini, B.L., Gaardløs, M., Wyrzykowski, D., Rothemund, S., Penk, A., Zacharias, M., and Samsonov, S.A. Rational design of glycosaminoglycan binding cyclic peptides using cPEPmatch. 2024. Computational and Structural Biotechnology Journal, Volume 23. https://doi.org/10.1016/j.csbj.2024.07.016
- Ishaqat, A.; Hahmann, J.; Lin, C.; Zhang, X.; He, C.; Rath, W. H.; Habib, P.; Sahnoun, S. E. M.; Rahimi, K; Vinokur, R; Mottaghy, F. M.; Göstl, R.; Bartneck, M.; Herrmann, A. In Vivo Polymer Mechanochemistry with Polynucleotides. Adv. Mater. 2024, 36, 2403752. https://doi.org/10.1002/adma.202403752
- Abdel-Rahman, S.; Santini, B.L.; Calvo-Barreiro, L. Zacharias,M.; Gabr, M. Design of cyclic peptides as novel inhibitors of ICOS/ICOSL interaction. 2024, 129599. https://doi.org/10.1016/j.bmcl.2024.129599
- Poprawa, S.M.; Stasi, M.; Kriebisch, B.A.K.; Wenisch, M.; Sastre, J.; Boekhoven, J. et al. Active droplets through enzyme-free, dynamic phosphorylation. Nat Commun 15, 4204 (2024). https://doi.org/10.1038/s41467-024-48571-z
- Kriebisch, C.M.E.; Burger, L.; Zozulia, O.; Stasi, M.; Floroni, A.; Braun D.; Gerland U.; Boekhoven, J. Template-based copying in chemically fuelled dynamic combinatorial libraries. Nat. Chem. 2024. https://doi.org/10.1038/s41557-024-01570-5
- Simone Giaveri, S.*; Bohra, N.*; Diehl, C.; Yang, H.Y.; Ballinger, M.; Paczia, N.; Glatter, T.; Erb T.J. Integrated translation and metabolism in a partially self-synthesizing biochemical network. Science, 11 Jul 2024, Vol 385, Issue 6705, pp. 174-178 DOI: 10.1126/science.adn3856. *shared first authorship
- Häfner, G. and Müller, M. Reaction-Driven Diffusiophoresis of Liquid Condensates: Potential Mechanisms for Intracellular Organization. ACS Nano 2024, 18, 26, 16530–16544. https://doi.org/10.1021/acsnano.3c12842
- Fink A.; Fazliev, S.; Abele, T.; Spatz, J.P.; Göpfrich, K.; Cavalcanti-Adam, E.A. Membrane localization of actin filaments stabilizes giant unilamellar vesicles against external deforming forces. Eur. J. Cell Biol. Volume 103, Issue 2, June 2024, 151428 https://doi.org/10.1016/j.ejcb.2024.151428
- Poprawa, S.M.; Stasi, M.; Kriebisch, B.A.K.; Wenisch, M.; Sastre, J.; Boekhoven, J. Active droplets through enzyme-free, dynamic phosphorylation. Nat Commun 15, 4204 (2024). https://doi.org/10.1038/s41467-024-48571-z
- Drozdowski, O.M. and Schwarz, U.S. Morphological instability at topological defects in a three-dimensional vertex model for spherical epithelia. Phys. Rev. Research 6, L022045. 2024. https://doi.org/10.1103/PhysRevResearch.6.L022045
- M. Poprawa, S.M.; Stasi, M.; Kriebisch, B.A.K.; Wenisch, M.; Sastre, J.; Boekhoven, J. Active droplets through enzyme-free, dynamic phosphorylation. Nat Commun 15, 4204 (2024). https://doi.org/10.1038/s41467-024-48571-z
- Zhao, X.; Hartich, D.; Godec, A. Emergence of Memory in Equilibrium versus Nonequilibrium Systems. Phys. Rev. Lett. 132, 147101, 2024. https://doi.org/10.1103/PhysRevLett.132.147101
Alfken, J.; Neuhaus, C.; Major, A.; Taskina, A.; Hoffmann, C., Ganzella, M., Petrovic, A., Zwicker, D.; Fernández-Busnadiego, R.; Jahn, R.; Milovanovic, D.; Salditt, T. Vesicle condensation induced by synapsin: condensate size, geometry, and vesicle shape deformations. Eur. Phys. J. E 47, 8 (2024). https://doi.org/10.1140/epje/s10189-023-00404-5 - Hahmann, J.; Ishaqat, A.; Lammers, T.; Herrmann, A. Sonogenetics for Monitoring and Modulating Biomolecular Function by Ultrasound. Angew Chem Int Ed Engl 2024, 63 (13), https://doi.org/10.1002/anie.202317112
- Kohyama, S.; Frohn, B.P.; Babl L.; Schwille, P. Nature Communications 2024. https://www.nature.com/articles/s41467-024-46203-0
- Stasi, M.; Soria-Carrera H.; Boekhoven J. Synthesis Goes Uphill. Nature Synthesis 2024. https://www.nature.com/articles/s44160-024-00515-7
- Ivanova, J.R.; Benk, A.S.; Schaefer, JV.; Dreier B; Hermann, L.O.; Plückthun, A; Missirlis, D.*; and Spatz, JP*. Designed Ankyrin Repeat Proteins as Actin Labels of Distinct Cytoskeletal Structures in Living Cells. ACS Nano. 2024 https://pubs.acs.org/doi/full/10.1021/acsnano.3c12265
- Macher, M.; Obermeier, A.; Fabritz, S.; Kube, M.; Kempf, H.; Dietz, H.; Platzman, I.; Spatz, J.P. An Efficient Method for the Production of High-Purity Bioinspired Large Unilamellar Vesicles. ACS Synth. Biol. 2024. https://pubs.acs.org/doi/10.1021/acssynbio.3c00540?ref=PDF
2023
- Häfner, G. and Müller, M. Reaction-driven assembly: controlling changes in membrane topology by reaction cycles. Soft Matter, 2023,19, 7281-7292. https://doi.org/10.1039/D3SM00876B
- Rennekamp, B.; Karfusehr, C.; Kurth, M.; Ünal, A.; Monego, D.; Riedmiller, K.; Gryn’ova, G.; Hudson, D. M.; Gräter, F. Collagen Breaks at Weak Sacrificial Bonds Taming Its Mechanoradicals. Nat. Commun. 2023, 14 (1), 2075. https://www.nature.com/articles/s41467-023-37726-z
- Pham, T. L.; Fazliev, S.; Baur, P.; Comba, P.; Thomas, F. An Engineered Β‐Hairpin Peptide Forming Thermostable Complexes with Zn II , Ni II , and Cu II through a His 3 Site. ChemBioChem 2023, 24 (3). https://doi.org/10.1002/cbic.202200588.
- Mayer, T.; Oesinghaus, L.; Simmel, F. C. Toehold-Mediated Strand Displacement in Random Sequence Pools. J. Am. Chem. Soc. 2023, 145 (1), 634–644. https://doi.org/10.1021/jacs.2c11208.
- Gürth, C.-M.; do Rego Barros Fernandes Lima, M. A.; Macarrón Palacios, V.; Cereceda Delgado, A. R.; Hubrich, J.; D’Este, E. Neurofilament Levels in Dendritic Spines Associate with Synaptic Status. Cells 2023, 12 (6), 909. https://doi.org/10.3390/cells12060909.
- Geisler, J.; Yan, V. T.; Grill, S.; Narayanan, A. Mass Balance Imaging: A Phase Portrait Analysis for Characterizing Growth Kinetics of Biomolecular Condensates. In Phase-Separated Biomolecular Condensates; Zhou, H.-X., Spille, J.-H., Banerjee, P. R., Eds.; Methods in Molecular Biology; Springer US: New York, NY, 2023; Vol. 2563, pp 413–424. https://doi.org/10.1007/978-1-0716-2663-4_21.
- Ehret, T.; Heißenberg, T.; de Buhr, S.; Aponte-Santamaría, C.; Steinem, C.; Gräter, F. FERM Domains Recruit Ample PI(4,5)P2s to Form Extensive Protein-Membrane Attachments. Biophys. J. 2023, 122 (7), 1325–1333. https://doi.org/10.1016/j.bpj.2023.02.027.
- Chen, X.; Stasi, M.; Rodon-Fores, J.; Großmann, P. F.; Bergmann, A. M.; Dai, K.; Tena-Solsona, M.; Rieger, B.; Boekhoven, J. A Carbodiimide-Fueled Reaction Cycle That Forms Transient 5(4 H )-Oxazolones. J. Am. Chem. Soc. 2023, 145 (12), 6880–6887. https://doi.org/10.1021/jacs.3c00273.
2022
- Xue, Y.; Fehn, N.; Brandt, V. K.; Stasi, M.; Boekhoven, J.; Heiz, U.; Kartouzian, A. Tunable Induced Circular Dichroism in Gels. Chirality 2022, 34 (3), 550–558. https://doi.org/10.1002/chir.23409.
- Werlein, C.; Ackermann, M.; Stark, H.; Shah, H. R.; Tzankov, A.; Haslbauer, J. D.; von Stillfried, S.; Bülow, R. D.; El-Armouche, A.; Kuenzel, S.; Robertus, J. L.; Reichardt, M.; Haverich, A.; Höfer, A.; Neubert, L.; Plucinski, E.; Braubach, P.; Verleden, S.; Salditt, T.; Marx, N.; Welte, T.; Bauersachs, J.; Kreipe, H.-H.; Mentzer, S. J.; Boor, P.; Black, S. M.; Länger, F.; Kuehnel, M.; Jonigk, D. Inflammation and Vascular Remodeling in COVID-19 Hearts. Angiogenesis 2022. https://doi.org/10.1007/s10456-022-09860-7.
- Treyde, W.; Riedmiller, K.; Gräter, F. Bond Dissociation Energies of X–H Bonds in Proteins. RSC Adv. 2022, 12 (53), 34557–34564. https://doi.org/10.1039/D2RA04002F.
- Staufer, O.; Hernandez Bücher, J. E.; Fichtler, J.; Schröter, M.; Platzman, I.; Spatz, J. P. Vesicle Induced Receptor Sequestration: Mechanisms behind Extracellular Vesicle‐Based Protein Signaling. Adv. Sci. 2022, 9 (13), 2200201. https://doi.org/10.1002/advs.202200201.
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2021
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- Morstein, J.; Kol, M.; Novak, A. J. E.; Feng, S.; Khayyo, S.; Hinnah, K.; Li-Purcell, N.; Pan, G.; Williams, B. M.; Riezman, H.; Atilla-Gokcumen, G. E.; Holthuis, J. C. M.; Trauner, D. Short Photoswitchable Ceramides Enable Optical Control of Apoptosis. ACS Chem. Biol. 2021, 16 (3), 452–456. https://doi.org/10.1021/acschembio.0c00823.
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- Schepers, A. V.; Lorenz, C.; Nietmann, P.; Janshoff, A.; Klumpp, S.; Köster, S. Multiscale Mechanics and Temporal Evolution of Vimentin Intermediate Filament Networks. Proc. Natl. Acad. Sci. 2021, 118 (27), e2102026118. https://doi.org/10.1073/pnas.2102026118.
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- Staufer, O.; Antona, S.; Zhang, D.; Csatári, J.; Schröter, M.; Janiesch, J.-W.; Fabritz, S.; Berger, I.; Platzman, I.; Spatz, J. P. Microfluidic Production and Characterization of Biofunctionalized Giant Unilamellar Vesicles for Targeted Intracellular Cargo Delivery. Biomaterials 2021, 264, 120203. https://doi.org/10.1016/j.biomaterials.2020.120203.
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- Teiwes, N. K.; Mey, I.; Baumann, P. C.; Strieker, L.; Unkelbach, U.; Steinem, C. Pore-Spanning Plasma Membranes Derived from Giant Plasma Membrane Vesicles. ACS Appl. Mater. Interfaces 2021, 13 (22), 25805–25812. https://doi.org/10.1021/acsami.1c06404.
- Wilhelm, J.; Kühn, S.; Tarnawski, M.; Gotthard, G.; Tünnermann, J.; Tänzer, T.; Karpenko, J.; Mertes, N.; Xue, L.; Uhrig, U.; Reinstein, J.; Hiblot, J.; Johnsson, K. Kinetic and Structural Characterization of the Self-Labeling Protein Tags HaloTag7, SNAP-Tag, and CLIP-Tag. Biochemistry 2021, 60 (33), 2560–2575. https://doi.org/10.1021/acs.biochem.1c00258.
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2020
- Baalmann, M.; Neises, L.; Bitsch, S.; Schneider, H.; Deweid, L.; Werther, P.; Ilkenhans, N.; Wolfring, M.; Ziegler, M. J.; Wilhelm, J.; Kolmar, H.; Wombacher, R. A Bioorthogonal Click Chemistry Toolbox for Targeted Synthesis of Branched and Well‐Defined Protein–Protein Conjugates. Angew. Chem. 2020, 132 (31), 12985–12993. https://doi.org/10.1002/ange.201915079.
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- Guido, I.; Diehl, D.; Olszok, N. A.; Bodenschatz, E. Cellular Velocity, Electrical Persistence and Sensing in Developed and Vegetative Cells during Electrotaxis. PLOS ONE 2020, 15 (9), e0239379. https://doi.org/10.1371/journal.pone.0239379.
- Hinnah, K.; Willems, S.; Morstein, J.; Heering, J.; Hartrampf, F. W. W.; Broichhagen, J.; Leippe, P.; Merk, D.; Trauner, D. Photohormones Enable Optical Control of the Peroxisome Proliferator-Activated Receptor γ (PPARγ). J. Med. Chem. 2020, 63 (19), 10908–10920. https://doi.org/10.1021/acs.jmedchem.0c00654.
- Kube, M.; Kohler, F.; Feigl, E.; Nagel-Yüksel, B.; Willner, E. M.; Funke, J. J.; Gerling, T.; Stömmer, P.; Honemann, M. N.; Martin, T. G.; Scheres, S. H. W.; Dietz, H. Revealing the Structures of Megadalton-Scale DNA Complexes with Nucleotide Resolution. Nat. Commun. 2020, 11 (1), 6229. https://doi.org/10.1038/s41467-020-20020-7.
- Luo, R.; Pashapour, S.; Staufer, O.; Platzman, I.; Spatz, J. P. Polymer‐Based Porous Microcapsules as Bacterial Traps. Adv. Funct. Mater. 2020, 30 (17), 1908855. https://doi.org/10.1002/adfm.201908855.
- Morstein, J.; Trads, J. B.; Hinnah, K.; Willems, S.; Barber, D. M.; Trauner, M.; Merk, D.; Trauner, D. Optical Control of the Nuclear Bile Acid Receptor FXR with a Photohormone. Chem. Sci. 2020, 11 (2), 429–434. https://doi.org/10.1039/C9SC02911G.
- Reichardt, M.; Frohn, J.; Khan, A.; Alves, F.; Salditt, T. Multi-Scale X-Ray Phase-Contrast Tomography of Murine Heart Tissue. Biomed. Opt. Express 2020, 11 (5), 2633. https://doi.org/10.1364/BOE.386576.
- Reichardt, M.; Neuhaus, C.; Nicolas, J.-D.; Bernhardt, M.; Toischer, K.; Salditt, T. X-Ray Structural Analysis of Single Adult Cardiomyocytes: Tomographic Imaging and Microdiffraction. Biophys. J. 2020, 119 (7), 1309–1323. https://doi.org/10.1016/j.bpj.2020.08.019.
- Reichardt, M.; Töpperwien, M.; Khan, A.; Alves, F.; Salditt, T. Fiber Orientation in a Whole Mouse Heart Reconstructed by Laboratory Phase-Contrast Micro-CT. J. Med. Imaging 2020, 7 (02), 1. https://doi.org/10.1117/1.JMI.7.2.023501.
- Rennekamp, B.; Kutzki, F.; Obarska-Kosinska, A.; Zapp, C.; Gräter, F. Hybrid Kinetic Monte Carlo/Molecular Dynamics Simulations of Bond Scissions in Proteins. J. Chem. Theory Comput. 2020, 16 (1), 553–563. https://doi.org/10.1021/acs.jctc.9b00786.
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- Toelzer, C.; Gupta, K.; Yadav, S. K. N.; Borucu, U.; Garzoni, F.; Staufer, O.; Capin, J.; Spatz, J.; Fitzgerald, D.; Berger, I.; Schaffitzel, C. Unexpected Free Fatty Acid Binding Pocket in the Cryo-EM Structure of SARS-CoV-2 Spike Protein; preprint; Biochemistry, 2020. https://doi.org/10.1101/2020.06.18.158584.
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2019
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- Baalmann, M.; Ziegler, M. J.; Werther, P.; Wilhelm, J.; Wombacher, R. Enzymatic and Site-Specific Ligation of Minimal-Size Tetrazines and Triazines to Proteins for Bioconjugation and Live-Cell Imaging. Bioconjug. Chem. 2019, 30 (5), 1405–1414. https://doi.org/10.1021/acs.bioconjchem.9b00157.
- Lorenz, C.; Forsting, J.; Schepers, A. V.; Kraxner, J.; Bauch, S.; Witt, H.; Klumpp, S.; Köster, S. Lateral Subunit Coupling Determines Intermediate Filament Mechanics. Phys. Rev. Lett. 2019, 123 (18), 188102. https://doi.org/10.1103/PhysRevLett.123.188102.
- Zhan, T.; Ambrosi, G.; Wandmacher, A. M.; Rauscher, B.; Betge, J.; Rindtorff, N.; Häussler, R. S.; Hinsenkamp, I.; Bamberg, L.; Hessling, B.; Müller-Decker, K.; Erdmann, G.; Burgermeister, E.; Ebert, M. P.; Boutros, M. MEK Inhibitors Activate Wnt Signalling and Induce Stem Cell Plasticity in Colorectal Cancer. Nat. Commun. 2019, 10 (1), 2197. https://doi.org/10.1038/s41467-019-09898-0.
- Oesinghaus, L.; Simmel, F. C. Switching the Activity of Cas12a Using Guide RNA Strand Displacement Circuits. Nat. Commun. 2019, 10 (1), 2092. https://doi.org/10.1038/s41467-019-09953-w.